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Database Developer II

Careers Integrated Resources Inc Waltham, MA (Onsite) Contractor
Title: Cloud Infrastructure/ AI/ML Engineer
Duration: 12 Months+ Possible Extension
Location: Waltham, MA 

Manager Notes:
Must have experience:
  • Minimum 3+ years of experience in cloud infrastructure, AI/ML development, and bioinformatics pipeline management
  • MS or PHD Degree
  • Demonstrated expertise with various computing platforms (HPC high performance computing, AWS , 7B, DNAnexus, AWS Sagemaker AI)
  • Cloud computing platforms (AWS, GCP) – Must have requirement AWS,similiar
  • Python and Bash (must have)
  • Communications, strong communication
  • Experience developing/deploying AI/ML frameworks
 
Nice to Have/ Preferred experience:
  • Containerization technologies (Docker, Kubernetes)
  • S3 AWS Storage, data storage, nice to have
  • Experience with NGS data analysis workflows and automation (Snakemake,Nextflow)

Position Overview
We are seeking an experienced Cloud Infrastructure/ AI/ML/ Data Engineer to support variety of projects across Genomic Medicine Unit (GMU) research and platform work. This contractor role focuses on providing infrastructure solutions to enable AI/ML models developments and applications. As such, the position will require pipelines execution, environment management, AI/ML model development/deployment, management of data for various bioinformatics workflows.

Required Experience
• 3+ years of experience in cloud infrastructure, AI/ML development, and bioinformatics pipeline management
• Advanced degree (MS or PhD) in Bioinformatics, Computational Biology, Computer Science or related field
• Demonstrated expertise with various computing platforms (HPC, 7B, DNAnexus, AWS Sagemaker AI)
• Strong background in NGS data analysis and pipeline automation

Key Responsibilities
• Pipeline Execution & Management: Run and maintain bioinformatics pipelines on cloud platforms
• Environment Management: Configure and support data/pipeline environments using 7B, and DNAnexus
• AI Infrastructure: Set up and maintain environments for AI model development and inference (AWS Sagemaker AI)
• Data Visualization: Create intuitive visualization tools for bench scientists and present data effectively
• LLM Development: Develop RAG (Retrieval-Augmented Generation) LLMs for Gene Therapy GMU use cases
• Automation: Develop and deploy agents to optimize/run routine NGS analyses and automate metadata verification

Technical Skills:
• Cloud computing platforms (AWS, GCP)
• Containerization technologies (Docker, Kubernetes)
• Programming languages (Python, R, Bash)
• Experience with NGS data analysis workflows and automation (Snakemake, Nextflow)
• Experience developing/deploying AI/ML frameworks
• Data visualization tools and libraries
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Job Snapshot

Employee Type

Contractor

Location

Waltham, MA (Onsite)

Job Type

Information Technology

Experience

Not Specified

Date Posted

04/24/2025

Job ID

25-44729

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